* Bolivia says to take control of mining project
* South American Silver vows to seek recourse
LA PAZ, July 12 (Reuters) - Bolivia is willing to compensate South American Silver Corp for revoking its concession on the Malku Khota project, but it will be far less than the $16 million the company says it has invested, the country's vice president said on Thursday.
Bolivian President Evo Morales said this week that he signed a deal with protesters opposed to the project stipulating that the government take back all the concessions granted to South American Silver's local subsidiary.
The Canadian company's shares sank on Wednesday after the announcement, and chief executive Greg Johnson said the company would seek recourse using any legal and diplomatic means available.
Violent protests over the Malku Khota mining property prompted Morales' decision. The leftist leader took similar action last month after clashes broke out at a project operated by commodities giant Glencore.
Malku Khota is a silver-indium-gallium deposit. The exploration-stage project was expected to produce some 13.2 million ounces of silver a year, according to a preliminary economic assessment.
"The state is predisposed to repay the costs of the exploration's advances up to today, once they are verified," Vice President Alvaro Garcia told a news conference.
"Our calculations indicate $2 million or $3 million," Garcia added.
South American Silver says it has invested some $16 million in the project since 2007.
After sinking nearly 25 percent on Wednesday, its shares closed up 31 percent at 48.5 Canadian cents on Thursday. The stock was still down more than 50 percent since Friday's market close.
Violence flared at Malku Khota last week as authorities negotiated with peasant farmers on the release of five Bolivian employee hostages. One man was killed and at least a dozen were injured.
Mining has played a key role in Bolivia's economy since the colonial era. The Andean nation mainly produces tin and silver, but is also home to the world's largest undeveloped lithium and potassium resources.
The government is working on a sweeping reform of mining legislation aimed at bolstering the state's role in the industry and giving it a bigger slice of the sector's profits.
Since taking office in 2006, Morales has nationalized the natural gas industry as well as the telecommunications and electricity sectors, arguing Bolivia's poor should benefit more from the country's rich natural resources. (Reporting by Carlos Quiroga; Writing by Hilary Burke; editing by Jim Marshall)