DOHA/BEIRUT Qatar, which has taken a lead in arming the Syrian opposition, is coordinating with the CIA and has tightened control of the arms flow to keep weapons out of the hands of al Qaeda-linked Islamist fighters, according to rebels and officials familiar with the operation.
With Britain and France discussing lifting an EU ban on arming the rebels fighting President Bashar al-Assad, Western countries are concerned about making sure no arms end up in the hands of groups like Jabhat al-Nusra, which has pledged support for al Qaeda and which Washington considers a terrorist group.
Rebel fighters in Syria say that in recent months the system for distributing arms has become more centralized, with arms being delivered through opposition National Coalition's General Command, led by Selim Idriss, a general who defected to the opposition and is a favorite of Washington.
Qatar mostly sends arms to rebels operating in the north of Syria, while Saudi Arabia, another rich Gulf Arab kingdom, sends weapons to fighters operating in the south, several rebel commanders said.
"The Qataris are now going through the Coalition for aid and humanitarian issues and for military issues they are going through the military command," a commander in northern Syria interviewed from Beirut said.
"Before the Coalition was formed they were going through liaison offices and other military and civil formations. That was at the beginning. Now it is different - it is all going through the Coalition and the military command."
Shipments of weapons to Syrian rebels were curbed last year when Washington raised concerns that arms were falling into the hands of groups like Jabhat al-Nusra.
Today, Qatari shipments have resumed with tighter controls exerted from the palace of Qatar's emir, Sheikh Hamad bin Khalifa al-Thani, in consultation with the U.S. Central Intelligence Agency, said a senior Qatari security official.
"There's an operations room in the Emir's diwan (office complex), with representatives from every ministry sitting in that room, deciding how much money to allocate for Syria's aid," the Qatari official said.
"There's a lot of consultation with the CIA, and they help Qatar with buying and moving the weapons into Syria, but just as consultants," he said. The CIA declined to comment.
Rebel commanders contacted by Reuters said they submit their lists of needs to the General Command led by Idriss, which forwards the requests to Qatar or Saudi Arabia.
One Western source involved in the process said the new system of control is not foolproof: sometimes weapons sent in by Qatar do in fact reach hardline groups.
Several rebel commanders said they believed wealthy Kuwaiti and Saudi individuals were also sending weapons and money to rebel fighters outside the National Coalition's distribution channel.
"They usually ask for a video proving that an attack took place with the name of the brigade that did it. Sometimes they ask for a statement expressing gratitude," said a rebel commander in Damascus.
He said the Saudis and Qataris also occasionally send weapons into each other's territory, bypassing normal controls.
"Sometimes the Qataris manage to send stuff to the southern part and the Saudis to the northern side. When they do so, they send it to brigades that are not part of the military command."
According to the Qatari official, weapons supplied included small arms including AK-47 rifles, rocket propelled grenades, hand grenades and ammunition. Qatar also provides instructions on battlefield techniques such as how to rig weapons on vehicles.
The weapons are purchased mainly from eastern Europe by arms brokers based in Britain and France, and are flown from Qatar to Ankara and then trucked to Syria, the Qatari source added.
Hugh Griffiths, a researcher on arms transfers at the Stockholm International Peace Research Institute, said 90 Qatari military air cargo flights were made to Turkey between 3 January 2012 and the end of April 2013.
He suggested the Qataris had made no particular effort to disguise the nature of the cargo.
"The Qataris never announced the cargo as 'humanitarian aid' as pretence, they've always been more forthright in terms of their support in the form of military aid," he said.
The planes were Qatari air force aircraft flying from Al Udeid, a big air force base shared with the U.S. military.
"This is quite unusual for arms deliveries intended for non-state actors in conflict zones, in the last 20 years or so the pattern has been to use private, commercial companies," he said.
(Additional reporting by Regan Doherty in Doha, Nick Tattersall and Ece Toksabay in Istanbul, Yara Bayoumy and William Maclean in Dubai, Tabassum Zakaria in Washington; Editing by Peter Graff)